Cluster no. 226

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Cluster is part of supercluster: 133

Cluster characteristics:

size 122
size_real 122
ecount 413
supercluster 133
annotations_summary 1.64% organelle/plastid
pair_completeness 0.340659340659341
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.245901639344262
satellite_probability 6.39302096328868e-11
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 42
S4 42
S6 38
comparative analysis - number of edges between species:
S5 S4 S6
S5 47.0 44 47.5
S4 44.0 31 39.0
S6 47.5 39 74.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.010 1.150 0.883
S4 1.150 0.985 0.880
S6 0.883 0.880 1.190

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 2 0.016

clusters connected through mates:

Cluster Number of shared
read pairs		 k
16 5 0.00457
612 5 0.133
1310 4 0.114
2580 3 0.0923
54 2 0.00193
10800 2 0.0635
12600 2 0.0635
41300 2 0.0645
42900 2 0.0645
7 1 0.000459
32 1 0.000741
150 1 0.00345
170 1 0.00844
1760 1 0.0299
3810 1 0.0308
4400 1 0.0328
4900 1 0.0312
9720 1 0.0317
29600 1 0.0323
33400 1 0.0323
47400 1 0.0323