Cluster no. 225
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Cluster is part of supercluster: 132
Cluster characteristics:
| size |
127 |
| size_real |
127 |
| ecount |
354 |
| supercluster |
132 |
| annotations_summary |
|
| pair_completeness |
0.133928571428571 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.204724409448819 |
| satellite_probability |
4.54769254532905e-13 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
41 |
| S4 |
35 |
| S6 |
51 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
26.0 |
32 |
46.5 |
| S4 |
32.0 |
37 |
42.0 |
| S6 |
46.5 |
42 |
50.0 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
0.843 |
0.977 |
1.140 |
| S4 |
0.977 |
1.060 |
0.967 |
| S6 |
1.140 |
0.967 |
0.923 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 49 |
22 |
0.0186 |
| 342 |
4 |
0.0597 |
| 530 |
3 |
0.0517 |
| 792 |
3 |
0.0536 |
| 264 |
2 |
0.0258 |
| 4160 |
2 |
0.04 |
| 10 |
1 |
0.000439 |
| 26 |
1 |
0.000479 |
| 51 |
1 |
0.000931 |
| 93 |
1 |
0.00177 |
| 113 |
1 |
0.00207 |
| 476 |
1 |
0.0168 |
| 7160 |
1 |
0.0198 |
| 38200 |
1 |
0.0202 |
|
CL225 ----> CL49
No. of shared pairs: :22