Cluster no. 224

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Cluster is part of supercluster: 131

Cluster characteristics:

size 133
size_real 133
ecount 327
supercluster 131
annotations_summary
pair_completeness 0.1875
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0075187969924812
satellite_probability 8.87680651322255e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 52
S4 37
S6 44
comparative analysis - number of edges between species:
S5 S4 S6
S5 57.0 35 35.5
S4 35.0 18 28.0
S6 35.5 28 55.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.150 1.110 0.768
S4 1.110 0.897 0.954
S6 0.768 0.954 1.280

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
1 10

clusters connected through mates:

Cluster Number of shared
read pairs		 k
104 5 0.00708
19 4 0.00257
1070 3 0.0571
54 2 0.0019
875 2 0.0377
39200 2 0.043
1 1 0.000297
10 1 0.00044
13 1 0.000672
45 1 0.000947
1170 1 0.02
5180 1 0.0215
9740 1 0.0217
13400 1 0.0217
21500 1 0.0215
28000 1 0.0215
31300 1 0.0215
31600 1 0.0215
31700 1 0.0215