Cluster no. 222
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Cluster is part of supercluster: 129
Cluster characteristics:
| size |
140 |
| size_real |
140 |
| ecount |
331 |
| supercluster |
129 |
| annotations_summary |
|
| pair_completeness |
0.4 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.135714285714286 |
| satellite_probability |
5.02748275987927e-14 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
36 |
| S4 |
54 |
| S6 |
50 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
17.0 |
20 |
20.5 |
| S4 |
20.0 |
63 |
61.0 |
| S6 |
20.5 |
61 |
48.0 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
1.700 |
0.80 |
0.911 |
| S4 |
0.800 |
1.01 |
1.080 |
| S6 |
0.911 |
1.08 |
0.947 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 13900 |
2 |
0.0645 |
| 1 |
1 |
0.000298 |
| 15 |
1 |
0.001 |
| 63 |
1 |
0.000855 |
| 14600 |
1 |
0.0323 |
| 33600 |
1 |
0.0323 |
| 35900 |
1 |
0.0323 |
| 47800 |
1 |
0.0323 |
|