Cluster no. 221

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Cluster is part of supercluster: 128

Cluster characteristics:

size 146
size_real 146
ecount 674
supercluster 128
annotations_summary 53.42% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.68% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness 0.351851851851852
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00684931506849315
satellite_probability 1.17007913038788e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 50
S4 36
S6 60
comparative analysis - number of edges between species:
S5 S4 S6
S5 81 60 84
S4 60 51 77
S6 84 77 100
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.080 0.956 0.964
S4 0.956 0.973 1.060
S6 0.964 1.060 0.989

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-GAG Tekay Ty3-GAG 78 0.5342
Reina Ty3-INT Reina Ty3-INT 1 0.0068

clusters with similarity:

Cluster Number of similarity hits
59 7
92 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
59 17 0.0179
89 14 0.042
92 10 0.0424
5090 2 0.0541
10100 2 0.0548
4 1 0.000313
32700 1 0.0278
43900 1 0.0278

CL221 ----> CL59

image

No. of shared pairs: :17

CL221 ----> CL89

image

No. of shared pairs: :14

CL221 ----> CL92

image

No. of shared pairs: :10