Cluster no. 220
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Cluster is part of supercluster: 127
Cluster characteristics:
| size |
153 |
| size_real |
153 |
| ecount |
563 |
| supercluster |
127 |
| annotations_summary |
|
| pair_completeness |
0.16793893129771 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0065359477124183 |
| satellite_probability |
8.12169207732869e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
54 |
| S4 |
48 |
| S6 |
51 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
49.0 |
65.0 |
59.5 |
| S4 |
65.0 |
69.0 |
63.5 |
| S6 |
59.5 |
63.5 |
69.0 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
0.916 |
1.070 |
1.010 |
| S4 |
1.070 |
0.996 |
0.943 |
| S6 |
1.010 |
0.943 |
1.050 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 14 |
15 |
0.0124 |
| 5 |
4 |
0.00176 |
| 119 |
2 |
0.00397 |
| 11600 |
2 |
0.0357 |
| 19700 |
2 |
0.036 |
| 44400 |
2 |
0.036 |
| 7 |
1 |
0.000454 |
| 99 |
1 |
0.00139 |
| 2420 |
1 |
0.0175 |
| 4500 |
1 |
0.0175 |
| 7020 |
1 |
0.0177 |
| 44000 |
1 |
0.018 |
| 47600 |
1 |
0.018 |
|
CL220 ----> CL14
No. of shared pairs: :15