Cluster no. 219

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Cluster is part of supercluster: 126

Cluster characteristics:

size 160
size_real 160
ecount 512
supercluster 126
annotations_summary
pair_completeness 0.159420289855073
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00625
satellite_probability 7.73356111831971e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 57
S4 51
S6 52
comparative analysis - number of edges between species:
S5 S4 S6
S5 64.0 57.5 60
S4 57.5 51.0 55
S6 60.0 55.0 52
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.995 0.992 1.010
S4 0.992 0.977 1.030
S6 1.010 1.030 0.955

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
59 11
78 4

clusters connected through mates:

Cluster Number of shared
read pairs		 k
59 31 0.0318
125 5 0.0137
4680 3 0.0496
11700 3 0.0504
4000 2 0.0331
9 1 0.000839
40 1 0.0011
214 1 0.0076
3440 1 0.0164
7140 1 0.0167
8990 1 0.0168
11600 1 0.0168
12000 1 0.0168
16200 1 0.0169
20200 1 0.0169
23800 1 0.0169
33300 1 0.0169
33400 1 0.0169
39600 1 0.0169
45700 1 0.0169

CL219 ----> CL59

image

No. of shared pairs: :31