Cluster no. 218

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Cluster is part of supercluster: 125

Cluster characteristics:

size 161
size_real 161
ecount 3343
supercluster 125
annotations_summary
pair_completeness 0.118055555555556
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0062111801242236
satellite_probability 6.16948676651695e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 52
S4 51
S6 58
comparative analysis - number of edges between species:
S5 S4 S6
S5 263 330 371
S4 330 368 416
S6 371 416 478
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.947 1.030 1.020
S4 1.030 0.991 0.988
S6 1.020 0.988 0.998

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
46 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
5 4 0.00176
99 3 0.00412
59 2 0.00204
92 2 0.00756
96 2 0.00314
119 2 0.0039
2 1 0.000317
10 1 0.000436
15 1 0.000969
17 1 0.000644
21 1 0.000433
23 1 0.000416
29 1 0.000442
36 1 0.000892
39 1 0.00124
41 1 0.000869
45 1 0.000932
46 1 0.00078
52 1 0.00113
64 1 0.000895
71 1 0.00126
72 1 0.000948
80 1 0.00404
98 1 0.00122
106 1 0.0036
113 1 0.00201
114 1 0.00289
144 1 0.00725
168 1 0.00503
172 1 0.00794
185 1 0.00791
188 1 0.00813
326 1 0.0117
343 1 0.012
1690 1 0.015
2290 1 0.0153
4880 1 0.0153
18900 1 0.0155
20000 1 0.0155
22600 1 0.0155
34600 1 0.0155
35300 1 0.0155
38800 1 0.0155
39400 1 0.0155
41600 1 0.0155
42600 1 0.0155