Cluster no. 217

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Cluster is part of supercluster: 124

Cluster characteristics:

size 165
size_real 165
ecount 310
supercluster 124
annotations_summary
pair_completeness 0.195652173913043
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00606060606060606
satellite_probability 9.23843870857443e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 68
S4 45
S6 52
comparative analysis - number of edges between species:
S5 S4 S6
S5 76.0 27.5 39.0
S4 27.5 16.0 24.5
S6 39.0 24.5 36.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.160 0.88 0.853
S4 0.880 1.07 1.120
S6 0.853 1.12 1.130

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
16 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
16 26 0.0232
1800 2 0.0339
11200 2 0.0351
15400 2 0.0354
37900 2 0.0354
13 1 0.000668
40 1 0.0011
1710 1 0.0171
7430 1 0.0175
10200 1 0.0175
11400 1 0.0175
12400 1 0.0175
13200 1 0.0175
13300 1 0.0175
14600 1 0.0177
14700 1 0.0177
15600 1 0.0177
17900 1 0.0177
22700 1 0.0177
24100 1 0.0177
27500 1 0.0177
32000 1 0.0177
37600 1 0.0177
37900 1 0.0177
42300 1 0.0177
46100 1 0.0177

CL217 ----> CL16

image

No. of shared pairs: :26