Cluster no. 216

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Cluster is part of supercluster: 123

Cluster characteristics:

size 167
size_real 167
ecount 380
supercluster 123
annotations_summary 17.37% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
2.40% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
0.60% Class_I/LINE:LINE-RT
pair_completeness 0.325396825396825
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00598802395209581
satellite_probability 1.17931272802845e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 65
S4 58
S6 44
comparative analysis - number of edges between species:
S5 S4 S6
S5 67.0 39.5 38
S4 39.5 39.0 39
S6 38.0 39.0 41
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.220 0.884 0.847
S4 0.884 1.070 1.070
S6 0.847 1.070 1.120

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-RT LINE LINE-RT 1 0.006
Reina Ty3-PROT Reina Ty3-PROT 4 0.024
Tekay Ty3-PROT Tekay Ty3-PROT 29 0.174

clusters connected through mates:

Cluster Number of shared
read pairs		 k
307 14 0.206
686 6 0.115
1330 5 0.103
20 2 0.00119
7 1 0.000457
19 1 0.000645
35 1 0.000927
83 1 0.000881
94 1 0.00118
137 1 0.00244
1070 1 0.0211
2140 1 0.0215
3420 1 0.022
4180 1 0.0227
32300 1 0.023

CL216 ----> CL307

image

No. of shared pairs: :14