Cluster no. 215

Go back to cluster table

Cluster is part of supercluster: 122

Cluster characteristics:

size 170
size_real 170
ecount 584
supercluster 122
annotations_summary 21.18% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
pair_completeness 0.770833333333333
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00588235294117647
satellite_probability 5.78030605032073e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 63
S4 42
S6 65
comparative analysis - number of edges between species:
S5 S4 S6
S5 70.0 56.0 88.5
S4 56.0 32.0 51.5
S6 88.5 51.5 90.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.888 1.090 1.050
S4 1.090 0.960 0.937
S6 1.050 0.937 0.994

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 36 0.21

clusters connected through mates:

Cluster Number of shared
read pairs		 k
534 5 0.286
28700 2 0.167
7 1 0.000463
49 1 0.000875
83 1 0.000906
3580 1 0.08
4350 1 0.08
17300 1 0.0833
22100 1 0.0833