Cluster no. 214

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Cluster is part of supercluster: 121

Cluster characteristics:

size 175
size_real 175
ecount 1014
supercluster 121
annotations_summary 0.57% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.57% Class_I/LTR/Ty1_copia/Angela:Ty1-GAG
pair_completeness 0.0869565217391305
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00571428571428571
satellite_probability 5.046097049556e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 60
S4 60
S6 55
comparative analysis - number of edges between species:
S5 S4 S6
S5 103 110 126
S4 110 91 111
S6 126 111 124
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.903 1.050 1.040
S4 1.050 0.945 0.996
S6 1.040 0.996 0.962

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Angela Ty1-GAG Angela Ty1-GAG 1 0.0057
TatV Ty3-RT TatV Ty3-RT 1 0.0057

clusters connected through mates:

Cluster Number of shared
read pairs		 k
20 3 0.00175
28 2 0.00116
33 2 0.00223
4240 2 0.0263
6570 2 0.0268
8 1 0.000477
14 1 0.000814
18 1 0.000773
19 1 0.000632
27 1 0.00103
39 1 0.00122
40 1 0.00108
41 1 0.000861
64 1 0.000887
71 1 0.00125
84 1 0.00129
117 1 0.00177
121 1 0.00216
130 1 0.00255
142 1 0.00225
219 1 0.0076
320 1 0.0098
1120 1 0.0126
1190 1 0.0127
1300 1 0.0126
3850 1 0.0133
4330 1 0.0132
11600 1 0.0133
39900 1 0.0134