Cluster no. 213

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Cluster is part of supercluster: 120

Cluster characteristics:

size 176
size_real 176
ecount 485
supercluster 120
annotations_summary 0.57% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
pair_completeness 0.466666666666667
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00568181818181818
satellite_probability 8.64741555314371e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 48
S4 87
S6 41
comparative analysis - number of edges between species:
S5 S4 S6
S5 32.0 52.5 30.0
S4 52.5 115.0 69.5
S6 30.0 69.5 34.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.180 0.938 0.952
S4 0.938 0.993 1.070
S6 0.952 1.070 0.925

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-PROT Ale Ty1-PROT 1 0.0057

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1010 7 0.182
830 6 0.154
855 5 0.13
5810 4 0.118
5020 2 0.0588
13200 2 0.0597
1 1 0.000298
5 1 0.000445
1430 1 0.0274
1580 1 0.0278
3000 1 0.0294
7560 1 0.0299
9770 1 0.0299
11300 1 0.0299
25500 1 0.0303