Cluster no. 212

Cluster no. 212

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Cluster is part of supercluster: 119

Cluster characteristics:

size	180
size_real	180
ecount	416
supercluster	119
annotations_summary	36.67% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG 5.56% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
pair_completeness	0.395348837209302
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00555555555555556
satellite_probability	1.08796458838458e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	54
S4	62
S6	64

comparative analysis - number of edges between species:

	S5	S4	S6
S5	38.0	41.5	39.5
S4	41.5	52.0	54.0
S6	39.5	54.0	56.0

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.120	0.984	0.924
S4	0.984	0.994	1.020
S6	0.924	1.020	1.040

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

CRM Ty3-GAG CRM Ty3-GAG 10 0.056

Tekay Ty3-GAG Tekay Ty3-GAG 66 0.367

clusters with similarity:

Cluster	Number of similarity hits

1

1

clusters connected through mates:

Cluster	Number of shared read pairs	k

1	22	0.00655
1410	7	0.157
1890	4	0.092
79	3	0.00704
4880	2	0.0488
39900	2	0.05
7	1	0.000457
16	1	0.000907
1530	1	0.0227
4380	1	0.0247
17500	1	0.025
22700	1	0.025
42600	1	0.025
46500	1	0.025

CL212 ----> CL1

No. of shared pairs: :22