Cluster no. 211

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Cluster is part of supercluster: 118

Cluster characteristics:

size 181
size_real 181
ecount 610
supercluster 118
annotations_summary 0.55% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness 0.521008403361344
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00552486187845304
satellite_probability 6.69549243788033e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 77
S4 54
S6 50
comparative analysis - number of edges between species:
S5 S4 S6
S5 127 71.0 80.0
S4 71 37.0 49.5
S6 80 49.5 45.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.000 0.989 1.010
S4 0.989 0.910 1.100
S6 1.010 1.100 0.901

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Reina Ty3-INT Reina Ty3-INT 1 0.0055

clusters with similarity:

Cluster Number of similarity hits
59 5
41 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
59 15 0.0159
3980 3 0.1
7630 3 0.1
7180 2 0.0656
26700 2 0.0678
73 1 0.0011
80 1 0.00471
100 1 0.00321
2500 1 0.0312
6580 1 0.0328
37500 1 0.0339

CL211 ----> CL59

image

No. of shared pairs: :15