Cluster no. 209
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Cluster is part of supercluster: 116
Cluster characteristics:
| size |
184 |
| size_real |
184 |
| ecount |
254 |
| supercluster |
116 |
| annotations_summary |
|
| pair_completeness |
0.194805194805195 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00543478260869565 |
| satellite_probability |
8.87680651322255e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
61 |
| S4 |
44 |
| S6 |
79 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
26.0 |
16.5 |
30.5 |
| S4 |
16.5 |
11.0 |
34.5 |
| S6 |
30.5 |
34.5 |
54.0 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
1.240 |
0.926 |
0.892 |
| S4 |
0.926 |
0.727 |
1.190 |
| S6 |
0.892 |
1.190 |
0.969 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 61 |
1 |
0.000799 |
| 2680 |
1 |
0.0153 |
| 3250 |
1 |
0.0154 |
| 4220 |
1 |
0.0155 |
| 8560 |
1 |
0.0157 |
| 9720 |
1 |
0.0157 |
| 10700 |
1 |
0.0157 |
| 13000 |
1 |
0.0157 |
| 14800 |
1 |
0.0159 |
| 15300 |
1 |
0.0159 |
| 15600 |
1 |
0.0159 |
| 28000 |
1 |
0.0159 |
| 32000 |
1 |
0.0159 |
| 35500 |
1 |
0.0159 |
| 35600 |
1 |
0.0159 |
| 39800 |
1 |
0.0159 |
| 47400 |
1 |
0.0159 |
|