Cluster no. 208

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Cluster is part of supercluster: 115

Cluster characteristics:

size 185
size_real 185
ecount 606
supercluster 115
annotations_summary 1.08% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
pair_completeness 0.541666666666667
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00540540540540541
satellite_probability 5.9149989235368e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 72
S4 50
S6 63
comparative analysis - number of edges between species:
S5 S4 S6
S5 86.0 64.5 68.5
S4 64.5 48.0 62.5
S6 68.5 62.5 81.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.090 1.02 0.894
S4 1.020 0.95 1.020
S6 0.894 1.02 1.090

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-GAG Tekay Ty3-GAG 2 0.011

clusters connected through mates:

Cluster Number of shared
read pairs		 k
83 6 0.00536
2250 6 0.197
20 2 0.0012
982 2 0.0588
1420 2 0.0667
4460 2 0.0667
27200 2 0.0702
7 1 0.00046
28 1 0.000596
65 1 0.00161
1280 1 0.0328
8680 1 0.0357