Cluster no. 204

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Cluster is part of supercluster: 111

Cluster characteristics:

size 199
size_real 199
ecount 729
supercluster 111
annotations_summary 5.53% Class_I/LTR/Ty1_copia/Bianca:Ty1-RH
pair_completeness 0.672268907563025
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0050251256281407
satellite_probability 1.9456658316349e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 77
S4 66
S6 56
comparative analysis - number of edges between species:
S5 S4 S6
S5 104.0 91.5 90
S4 91.5 70.0 67
S6 90.0 67.0 58
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.93 1.020 1.070
S4 1.02 0.977 0.994
S6 1.07 0.994 0.915

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Bianca Ty1-RH Bianca Ty1-RH 11 0.055

clusters connected through mates:

Cluster Number of shared
read pairs		 k
426 7 0.237
436 4 0.154
4610 3 0.136
10 1 0.000445
35 1 0.000947
90 1 0.00197
1150 1 0.04
4210 1 0.0455
10000 1 0.0476
17000 1 0.0488