Cluster no. 202

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Cluster is part of supercluster: 109

Cluster characteristics:

size 205
size_real 205
ecount 590
supercluster 109
annotations_summary
pair_completeness 0.151685393258427
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0048780487804878
satellite_probability 1.62805081405569e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 78
S4 65
S6 62
comparative analysis - number of edges between species:
S5 S4 S6
S5 116 70.0 71.0
S4 70 41.0 47.5
S6 71 47.5 56.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.040 1.010 0.934
S4 1.010 0.963 1.010
S6 0.934 1.010 1.090

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
42 37 0.0373
87 9 0.0135
437 5 0.0575
989 4 0.0482
4190 3 0.0385
1450 2 0.0247
11 1 0.000454
32 1 0.000717
49 1 0.000829
325 1 0.0102
726 1 0.012
1270 1 0.0123
1530 1 0.0126
1740 1 0.0128
3630 1 0.0128
3920 1 0.013
5200 1 0.0129
9420 1 0.013
16100 1 0.0131
31400 1 0.0131
32200 1 0.0131
35200 1 0.0131
40500 1 0.0131
41900 1 0.0131
45500 1 0.0131
47200 1 0.0131

CL202 ----> CL42

image

No. of shared pairs: :37