Cluster no. 200
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Cluster is part of supercluster: 107
Cluster characteristics:
| size |
209 |
| size_real |
209 |
| ecount |
807 |
| supercluster |
107 |
| annotations_summary |
|
| pair_completeness |
0.658730158730159 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00478468899521531 |
| satellite_probability |
3.15659983381055e-22 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
70 |
| S4 |
84 |
| S6 |
55 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
81.0 |
97.5 |
72.5 |
| S4 |
97.5 |
126.0 |
95.0 |
| S6 |
72.5 |
95.0 |
70.0 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
1.040 |
0.984 |
0.981 |
| S4 |
0.984 |
1.000 |
1.010 |
| S6 |
0.981 |
1.010 |
1.000 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 15 |
13 |
0.0131 |
| 65 |
7 |
0.0113 |
| 1 |
1 |
0.000299 |
| 7 |
1 |
0.000461 |
| 8 |
1 |
0.000489 |
| 12 |
1 |
0.000361 |
| 56 |
1 |
0.000857 |
| 71 |
1 |
0.00133 |
| 11700 |
1 |
0.0455 |
| 19600 |
1 |
0.0444 |
| 29200 |
1 |
0.0444 |
| 29300 |
1 |
0.0444 |
| 31100 |
1 |
0.0444 |
|
CL200 ----> CL15
No. of shared pairs: :13