Cluster no. 199

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Cluster is part of supercluster: 106

Cluster characteristics:

size 210
size_real 210
ecount 1856
supercluster 106
annotations_summary 38.10% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
12.86% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
pair_completeness 0.390728476821192
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00476190476190476
satellite_probability 7.03651426040455e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 66
S4 79
S6 65
comparative analysis - number of edges between species:
S5 S4 S6
S5 206 204 196
S4 204 236 218
S6 196 218 177
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.04 0.95 1.020
S4 0.95 1.01 1.040
S6 1.02 1.04 0.941

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
CRM Ty3-GAG CRM Ty3-GAG 27 0.13
Tekay Ty3-GAG Tekay Ty3-GAG 80 0.38

clusters with similarity:

Cluster Number of similarity hits
16 5
54 4

clusters connected through mates:

Cluster Number of shared
read pairs		 k
54 39 0.0371
163 12 0.109
673 8 0.144
16 7 0.00631
1650 2 0.0392
10 1 0.00044
13 1 0.000672
1860 1 0.0202
5890 1 0.0208
20400 1 0.0213
33600 1 0.0213

CL199 ----> CL54

image

No. of shared pairs: :39

CL199 ----> CL163

image

No. of shared pairs: :12