Cluster no. 198

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Cluster is part of supercluster: 105

Cluster characteristics:

size 215
size_real 215
ecount 3091
supercluster 105
annotations_summary
pair_completeness 0.535714285714286
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.534883720930233
satellite_probability 0.000157392864438712
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 62
S4 81
S6 72
comparative analysis - number of edges between species:
S5 S4 S6
S5 211 332 288
S4 332 466 416
S6 288 416 341
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.942 1.020 1.030
S4 1.020 0.977 1.010
S6 1.030 1.010 0.965

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
3 1
63 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1440 5 0.135
620 4 0.1
2780 3 0.0857
3090 3 0.087
8 2 0.000974
41 2 0.00179
8610 2 0.0588
9530 2 0.0588
10200 2 0.0588
1 1 0.000298
3 1 0.00045
5 1 0.000445
7 1 0.000459
24 1 0.000871
62 1 0.00187
63 1 0.000853
132 1 0.00539
133 1 0.00541
6680 1 0.0299
7700 1 0.0294
32800 1 0.0299
39600 1 0.0299
45700 1 0.0299
47900 1 0.0299
48000 1 0.0299