Cluster no. 197

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Cluster is part of supercluster: 104

Cluster characteristics:

size 223
size_real 223
ecount 1833
supercluster 104
annotations_summary 100.00% organelle/plastid
pair_completeness 0.813008130081301
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00448430493273543
satellite_probability 2.15940292115794e-23
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 84
S4 61
S6 78
comparative analysis - number of edges between species:
S5 S4 S6
S5 245 192 234
S4 192 136 192
S6 234 192 215
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.996 1.01 0.996
S4 1.010 0.92 1.050
S6 0.996 1.05 0.959

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 223 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
148 13 0.419
177 7 0.368
77 1 0.00122

CL197 ----> CL148

image

No. of shared pairs: :13