Cluster no. 196

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Cluster is part of supercluster: 103

Cluster characteristics:

size 225
size_real 225
ecount 529
supercluster 103
annotations_summary 0.44% organelle/plastid
pair_completeness 0.271186440677966
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0222222222222222
satellite_probability 3.42669326396029e-19
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 81
S4 78
S6 66
comparative analysis - number of edges between species:
S5 S4 S6
S5 48.0 73.5 45.5
S4 73.5 92.0 50.5
S6 45.5 50.5 50.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.910 1.080 0.987
S4 1.080 1.040 0.847
S6 0.987 0.847 1.240

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.0044

clusters with similarity:

Cluster Number of similarity hits
68 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
68 19 0.0159
55 6 0.00553
252 4 0.0465
274 3 0.033
869 3 0.0423
6450 2 0.0301
29 1 0.000441
714 1 0.0144
766 1 0.0137
904 1 0.0143
922 1 0.0146
936 1 0.0146
1400 1 0.0145
1680 1 0.015
2540 1 0.0149
3250 1 0.015
3490 1 0.0148
4140 1 0.0149
5100 1 0.015
12400 1 0.0152
12400 1 0.0152
14900 1 0.0153
18700 1 0.0153
19800 1 0.0153
21300 1 0.0153
22000 1 0.0153
23000 1 0.0153
24600 1 0.0153
26500 1 0.0153
27900 1 0.0153
28400 1 0.0153
30600 1 0.0153
34100 1 0.0153
41400 1 0.0153
44100 1 0.0153

CL196 ----> CL68

image

No. of shared pairs: :19