Cluster no. 195

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Cluster is part of supercluster: 102

Cluster characteristics:

size 231
size_real 231
ecount 404
supercluster 102
annotations_summary
pair_completeness 0.262295081967213
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00432900432900433
satellite_probability 1.39528303731336e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 83
S4 84
S6 64
comparative analysis - number of edges between species:
S5 S4 S6
S5 68.0 57.5 40
S4 57.5 49.0 35
S6 40.0 35.0 22
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.000 0.992 1.010
S4 0.992 0.989 1.030
S6 1.010 1.030 0.945

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
322 5 0.0541
325 4 0.0442
675 3 0.04
2110 3 0.042
4250 2 0.0286
8100 2 0.029
29900 2 0.0292
9 1 0.000833
10 1 0.000436
15 1 0.000966
32 1 0.000721
57 1 0.000844
59 1 0.00102
83 1 0.000862
90 1 0.0018
103 1 0.00126
346 1 0.0119
1120 1 0.0138
10600 1 0.0147
15700 1 0.0146
16600 1 0.0146
30800 1 0.0146
36200 1 0.0146
37000 1 0.0146
42000 1 0.0146