Cluster no. 194

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Cluster is part of supercluster: 101

Cluster characteristics:

size 238
size_real 238
ecount 2103
supercluster 101
annotations_summary
pair_completeness 0.555555555555556
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.092436974789916
satellite_probability 2.13148935435934e-16
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 71
S4 70
S6 97
comparative analysis - number of edges between species:
S5 S4 S6
S5 216 174 264
S4 174 172 228
S6 264 228 384
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.060 0.974 0.970
S4 0.974 1.100 0.954
S6 0.970 0.954 1.050

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
71 2 0.00262
75 2 0.00367
1 1 0.000298
9 1 0.000857
10 1 0.000442
13 1 0.000677
14 1 0.000841
34 1 0.00206
43 1 0.00114
50 1 0.00108
56 1 0.000848
58 1 0.000817
78 1 0.00168
98 1 0.00127
112 1 0.00153
113 1 0.00213
608 1 0.0253
743 1 0.025
1070 1 0.0263
4860 1 0.0278
5310 1 0.0278
14500 1 0.0286
15600 1 0.0286
28000 1 0.0286
28100 1 0.0286
41200 1 0.0286
42000 1 0.0286
43400 1 0.0286
46400 1 0.0286