Cluster no. 193

Go back to cluster table

Cluster is part of supercluster: 100

Cluster characteristics:

size 249
size_real 249
ecount 1110
supercluster 100
annotations_summary 0.40% organelle/plastid
pair_completeness 0.422857142857143
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.120481927710843
satellite_probability 1.15670886618783e-14
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 75
S4 78
S6 96
comparative analysis - number of edges between species:
S5 S4 S6
S5 89.0 95.5 147
S4 95.5 100.0 128
S6 147.0 128.0 180
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.899 0.988 1.080
S4 0.988 1.060 0.965
S6 1.080 0.965 0.965

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.004

clusters with similarity:

Cluster Number of similarity hits
68 3
5 1
54 1
93 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
54 16 0.0152
134 8 0.0255
16 2 0.0018
49 2 0.00169
68 2 0.00169
817 2 0.0342
2040 2 0.0367
3080 2 0.0374
6130 2 0.0381
5 1 0.000442
56 1 0.000836
63 1 0.00084
71 1 0.00128
93 1 0.00176
660 1 0.0163
3380 1 0.0187
6410 1 0.019
8260 1 0.0192
10400 1 0.0192
10800 1 0.0192
19100 1 0.0194
20600 1 0.0194
21600 1 0.0194
22800 1 0.0194
25100 1 0.0194
29200 1 0.0194
42300 1 0.0194

CL193 ----> CL54

image

No. of shared pairs: :16