Cluster no. 192
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Cluster is part of supercluster: 28
Cluster characteristics:
| size |
260 |
| size_real |
260 |
| ecount |
2169 |
| supercluster |
28 |
| annotations_summary |
|
| pair_completeness |
0.756756756756757 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00384615384615385 |
| satellite_probability |
5.68788576307886e-23 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
85 |
| S4 |
94 |
| S6 |
81 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
227 |
266 |
226 |
| S4 |
266 |
287 |
239 |
| S6 |
226 |
239 |
194 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
0.954 |
1.010 |
1.030 |
| S4 |
1.010 |
0.992 |
0.994 |
| S6 |
1.030 |
0.994 |
0.970 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 107 |
27 |
0.122 |
| 113 |
1 |
0.00221 |
| 162 |
1 |
0.0328 |
|
CL192 ----> CL107
No. of shared pairs: :27