Cluster no. 191

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Cluster is part of supercluster: 99

Cluster characteristics:

size 260
size_real 260
ecount 580
supercluster 99
annotations_summary
pair_completeness 0.382978723404255
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00384615384615385
satellite_probability 7.55887620545779e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 81
S4 99
S6 80
comparative analysis - number of edges between species:
S5 S4 S6
S5 56.0 62.0 54.5
S4 62.0 89.0 66.5
S6 54.5 66.5 69.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.090 0.958 0.964
S4 0.958 1.090 0.933
S6 0.964 0.933 1.110

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
75 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
75 15 0.0264
231 7 0.0725
344 4 0.0513
1630 3 0.0492
1950 3 0.0496
2760 3 0.0488
3100 3 0.0492
12900 3 0.0504
7240 2 0.0333
27500 2 0.0339
34400 2 0.0339
47600 2 0.0339
46 1 0.000784
125 1 0.00274
636 1 0.0152
4160 1 0.0165
4780 1 0.0165
23900 1 0.0169
41700 1 0.0169

CL191 ----> CL75

image

No. of shared pairs: :15