Cluster no. 190

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Cluster is part of supercluster: 98

Cluster characteristics:

size 267
size_real 267
ecount 1264
supercluster 98
annotations_summary 25.47% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
pair_completeness 0.689873417721519
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0861423220973783
satellite_probability 2.26457495169281e-17
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 93
S4 85
S6 89
comparative analysis - number of edges between species:
S5 S4 S6
S5 176 148 150
S4 148 116 126
S6 150 126 124
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.990 1.010 0.998
S4 1.010 0.962 1.020
S6 0.998 1.020 0.982

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 68 0.25

clusters connected through mates:

Cluster Number of shared
read pairs		 k
207 5 0.128
4560 3 0.111
4900 3 0.113
103 2 0.00267
9120 2 0.0769
39900 2 0.0784
42800 2 0.0784
21 1 0.000441
22 1 0.0012
28 1 0.000597
33 1 0.00118
42 1 0.00106
72 1 0.000985
113 1 0.00218
808 1 0.0308
928 1 0.0317
23400 1 0.0392
24000 1 0.0392
37000 1 0.0392
41800 1 0.0392