Cluster no. 189

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Cluster is part of supercluster: 97

Cluster characteristics:

size 268
size_real 268
ecount 624
supercluster 97
annotations_summary 0.37% organelle/plastid
pair_completeness 0.276190476190476
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00373134328358209
satellite_probability 1.30056036622834e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 89
S4 71
S6 108
comparative analysis - number of edges between species:
S5 S4 S6
S5 67.0 49.5 92.5
S4 49.5 34.0 67.5
S6 92.5 67.5 104.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.957 0.979 1.050
S4 0.979 0.930 1.060
S6 1.050 1.060 0.931

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.0037

clusters connected through mates:

Cluster Number of shared
read pairs		 k
98 8 0.00965
235 5 0.0452
2740 4 0.051
30 3 0.00177
2 1 0.000316
13 1 0.000659
19 1 0.000631
37 1 0.000955
41 1 0.000859
49 1 0.000828
77 1 0.00113
121 1 0.00214
130 1 0.00253
185 1 0.00719
495 1 0.0116
960 1 0.0122
1040 1 0.0122
1580 1 0.0125
3800 1 0.0127
7000 1 0.013
14000 1 0.013
16200 1 0.013
16800 1 0.013
33200 1 0.013