Cluster no. 188

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Cluster is part of supercluster: 96

Cluster characteristics:

size 271
size_real 271
ecount 800
supercluster 96
annotations_summary
pair_completeness 0.38974358974359
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.188191881918819
satellite_probability 1.66344862623947e-12
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 83
S4 84
S6 104
comparative analysis - number of edges between species:
S5 S4 S6
S5 85.0 88.5 83.5
S4 88.5 112.0 83.5
S6 83.5 83.5 92.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.03 0.970 1.000
S4 0.97 1.110 0.908
S6 1.00 0.908 1.100

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
49 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1380 4 0.0625
11600 2 0.0328
7 1 0.000453
30 1 0.000597
35 1 0.000912
41 1 0.000872
49 1 0.00084
56 1 0.00083
60 1 0.00306
90 1 0.00183
218 1 0.00813
546 1 0.0154
10200 1 0.0164
12700 1 0.0164
13100 1 0.0164
30200 1 0.0165
32100 1 0.0165
38700 1 0.0165
44300 1 0.0165