Cluster no. 186

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Cluster is part of supercluster: 94

Cluster characteristics:

size 285
size_real 285
ecount 783
supercluster 94
annotations_summary 32.63% Class_I/LINE:LINE-RT
11.23% Class_I/LINE:LINE-ENDO
pair_completeness 0.515957446808511
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00350877192982456
satellite_probability 2.0897667525813e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 83
S4 89
S6 113
comparative analysis - number of edges between species:
S5 S4 S6
S5 77.0 74.5 87
S4 74.5 84.0 98
S6 87.0 98.0 103
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.060 0.954 0.992
S4 0.954 1.000 1.040
S6 0.992 1.040 0.972

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-ENDO LINE LINE-ENDO 32 0.11
LINE LINE-RT LINE LINE-RT 93 0.33

clusters connected through mates:

Cluster Number of shared
read pairs		 k
296 11 0.172
2010 6 0.124
1280 4 0.0792
633 3 0.0561
1410 3 0.0612
2080 3 0.0619
2590 3 0.0612
8800 3 0.0638
11100 3 0.0638
11700 3 0.0638
2660 2 0.0417
4030 2 0.0417
26100 2 0.043
397 1 0.0192
570 1 0.0183
1180 1 0.0196
1760 1 0.0208
2230 1 0.0211
2640 1 0.0213
4020 1 0.0208
6720 1 0.0211
6800 1 0.0215
7330 1 0.0211
10400 1 0.0217
13000 1 0.0213
21200 1 0.0215
26900 1 0.0215
31500 1 0.0215
39400 1 0.0215
42800 1 0.0215
45100 1 0.0215

CL186 ----> CL296

image

No. of shared pairs: :11