Cluster no. 185

Go back to cluster table

Cluster is part of supercluster: 93

Cluster characteristics:

size 292
size_real 292
ecount 1126
supercluster 93
annotations_summary
pair_completeness 0.397129186602871
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0616438356164384
satellite_probability 9.38962016163371e-18
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 89
S4 100
S6 103
comparative analysis - number of edges between species:
S5 S4 S6
S5 101 112 114
S4 112 158 144
S6 114 144 128
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.07 0.93 1.020
S4 0.93 1.04 1.020
S6 1.02 1.02 0.967

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
334 9 0.103
2660 4 0.0602
168 2 0.0101
1300 2 0.029
2000 2 0.0303
5970 2 0.0308
33600 2 0.0312
5 1 0.000439
7 1 0.000452
13 1 0.000664
15 1 0.00097
19 1 0.000636
27 1 0.00104
30 1 0.000596
41 1 0.000869
56 1 0.000827
59 1 0.00102
73 1 0.00106
76 1 0.0018
130 1 0.00262
189 1 0.00719
218 1 0.00791
392 1 0.0125
1770 1 0.015
3530 1 0.0154
5810 1 0.0154
18200 1 0.0156