Cluster no. 184

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Cluster is part of supercluster: 92

Cluster characteristics:

size 301
size_real 301
ecount 3364
supercluster 92
annotations_summary 0.33% organelle/mitochondria
0.33% organelle/plastid
pair_completeness 0.349775784753363
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.332225913621262
satellite_probability 6.90304769383101e-09
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 112
S4 97
S6 92
comparative analysis - number of edges between species:
S5 S4 S6
S5 602 442 364
S4 442 323 280
S6 364 280 265
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.020 1.010 0.957
S4 1.010 0.994 0.992
S6 0.957 0.992 1.080

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 1 0.0033
plastid plastid 1 0.0033

clusters with similarity:

Cluster Number of similarity hits
2 58
81 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
2 52 0.0164
81 5 0.0049
1 4 0.00118
2290 4 0.053
3850 3 0.04
13600 2 0.027
9 1 0.000829
32 1 0.000719
84 1 0.00129
1380 1 0.013
12600 1 0.0135
17000 1 0.0136
23500 1 0.0136
25000 1 0.0136
31500 1 0.0136
31600 1 0.0136
43400 1 0.0136
43600 1 0.0136
43900 1 0.0136

CL184 ----> CL2

image

No. of shared pairs: :52