Cluster no. 181

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Cluster is part of supercluster: 89

Cluster characteristics:

size 393
size_real 393
ecount 1094
supercluster 89
annotations_summary 35.62% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
2.80% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
0.25% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
pair_completeness 0.429090909090909
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00254452926208651
satellite_probability 5.12148319141113e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 134
S4 142
S6 117
comparative analysis - number of edges between species:
S5 S4 S6
S5 158 134 118
S4 134 126 104
S6 118 104 96
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.03 0.980 0.990
S4 0.98 1.040 0.983
S6 0.99 0.983 1.030

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
CRM Ty3-GAG CRM Ty3-GAG 11 0.0280
Reina Ty3-GAG Reina Ty3-GAG 1 0.0025
Tekay Ty3-GAG Tekay Ty3-GAG 140 0.3562

clusters with similarity:

Cluster Number of similarity hits
7 3
70 2
105 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
7 26 0.0117
70 11 0.0196
165 9 0.0458
1250 5 0.0599
11800 3 0.0375
1 2 0.000588
45 2 0.00184
3460 2 0.0245
13 1 0.000657
35 1 0.000897
44 1 0.00165
50 1 0.00103
58 1 0.000788
61 1 0.000788
63 1 0.000821
105 1 0.00193
2000 1 0.0121
9050 1 0.0125
9380 1 0.0127
10600 1 0.0125
10600 1 0.0125
16000 1 0.0126
29800 1 0.0126
30400 1 0.0126
30700 1 0.0126

CL181 ----> CL7

image

No. of shared pairs: :26

CL181 ----> CL70

image

No. of shared pairs: :11