Cluster no. 180

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Cluster is part of supercluster: 88

Cluster characteristics:

size 400
size_real 400
ecount 1809
supercluster 88
annotations_summary 0.50% organelle/plastid
pair_completeness 0.261829652996845
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0025
satellite_probability 1.39528303731336e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 131
S4 136
S6 133
comparative analysis - number of edges between species:
S5 S4 S6
S5 161 204 164
S4 204 254 228
S6 164 228 200
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.040 1.020 0.948
S4 1.020 0.975 1.020
S6 0.948 1.020 1.030

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 2 0.005

clusters with similarity:

Cluster Number of similarity hits
24 7
5 6

clusters connected through mates:

Cluster Number of shared
read pairs		 k
5 73 0.0313
24 8 0.00649
50 3 0.00298
77 3 0.00325
4110 2 0.0169
6430 2 0.0168
7340 2 0.0169
11300 2 0.0169
11800 2 0.0169
18400 2 0.0169
2 1 0.000312
10 1 0.000426
13 1 0.000641
29 1 0.000431
49 1 0.000801
56 1 0.000792
98 1 0.00115
113 1 0.00181
140 1 0.00312
3330 1 0.0084
4010 1 0.00844
4260 1 0.00844
8040 1 0.00844
8290 1 0.00844
8380 1 0.00844
13800 1 0.00847
15900 1 0.00847
22500 1 0.00847
26300 1 0.00847
26900 1 0.00847
27100 1 0.00847
47000 1 0.00847

CL180 ----> CL5

image

No. of shared pairs: :73