Cluster no. 178

Go back to cluster table

Cluster is part of supercluster: 86

Cluster characteristics:

size 442
size_real 442
ecount 5508
supercluster 86
annotations_summary
pair_completeness 0.483221476510067
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.160633484162896
satellite_probability 1.53087318041899e-13
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 141
S4 155
S6 146
comparative analysis - number of edges between species:
S5 S4 S6
S5 614 642 566
S4 642 723 614
S6 566 614 526
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.02 0.98 1.000
S4 0.98 1.02 1.000
S6 1.00 1.00 0.995

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
775 4 0.0485
1750 4 0.0497
39 3 0.00365
6970 3 0.038
4 2 0.000618
9 2 0.00165
33 2 0.00222
51 2 0.00181
16200 2 0.0256
23000 2 0.0256
25000 2 0.0256
6 1 0.000276
7 1 0.00045
10 1 0.000434
15 1 0.000957
20 1 0.000581
21 1 0.000431
22 1 0.00113
26 1 0.000472
29 1 0.000439
34 1 0.0019
35 1 0.000898
38 1 0.00167
40 1 0.00108
42 1 0.00101
55 1 0.000912
58 1 0.000789
84 1 0.00128
113 1 0.00195
121 1 0.00214
132 1 0.00435
166 1 0.00746
846 1 0.0118
875 1 0.0118
1970 1 0.0125
2230 1 0.0123
4060 1 0.0127
10000 1 0.0127
11300 1 0.0127
12600 1 0.0127
14700 1 0.0128
17200 1 0.0128
18200 1 0.0128
21900 1 0.0128
25400 1 0.0128
25900 1 0.0128
31400 1 0.0128
34800 1 0.0128
35000 1 0.0128
39900 1 0.0128
41900 1 0.0128
45300 1 0.0128
47000 1 0.0128
47300 1 0.0128