Cluster no. 177

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Cluster is part of supercluster: 85

Cluster characteristics:

size 447
size_real 447
ecount 3499
supercluster 85
annotations_summary 95.97% organelle/plastid
2.01% organelle/mitochondria
pair_completeness 0.935064935064935
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00223713646532438
satellite_probability 1.22924222468107e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 138
S4 141
S6 168
comparative analysis - number of edges between species:
S5 S4 S6
S5 393 328 382
S4 328 358 423
S6 382 423 482
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.130 0.937 0.942
S4 0.937 1.020 1.040
S6 0.942 1.040 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 9 0.02
plastid plastid 429 0.96

clusters connected through mates:

Cluster Number of shared
read pairs		 k
146 7 0.222
197 7 0.368