Cluster no. 176

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Cluster is part of supercluster: 84

Cluster characteristics:

size 449
size_real 449
ecount 2172
supercluster 84
annotations_summary 0.22% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness 0.713740458015267
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0022271714922049
satellite_probability 1.39099901770407e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 134
S4 168
S6 147
comparative analysis - number of edges between species:
S5 S4 S6
S5 209 243 199
S4 243 388 248
S6 199 248 195
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.070 0.922 1.030
S4 0.922 1.090 0.955
S6 1.030 0.955 1.030

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Reina Ty3-INT Reina Ty3-INT 1 0.0022

clusters with similarity:

Cluster Number of similarity hits
126 3

clusters connected through mates:

Cluster Number of shared
read pairs		 k
126 19 0.104
2540 4 0.0976
2030 3 0.0759
3700 3 0.0769
4220 3 0.075
1140 2 0.0488
1200 2 0.0488
2420 2 0.0488
10100 2 0.0513
136 1 0.00556
2280 1 0.0247
2540 1 0.0256
4780 1 0.0256
6320 1 0.026
8530 1 0.0256
30600 1 0.026
32300 1 0.026
42800 1 0.026
44300 1 0.026

CL176 ----> CL126

image

No. of shared pairs: :19