Cluster no. 175

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Cluster is part of supercluster: 83

Cluster characteristics:

size 472
size_real 472
ecount 1514
supercluster 83
annotations_summary 68.86% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
17.37% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
pair_completeness 0.52258064516129
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00211864406779661
satellite_probability 2.0897667525813e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 151
S4 161
S6 160
comparative analysis - number of edges between species:
S5 S4 S6
S5 194 164 163
S4 164 187 152
S6 163 152 173
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.080 0.948 0.969
S4 0.948 1.110 0.938
S6 0.969 0.938 1.100

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-CHDII Tekay Ty3-CHDII 82 0.17
Tekay Ty3-INT Tekay Ty3-INT 325 0.69

clusters with similarity:

Cluster Number of similarity hits
16 7

clusters connected through mates:

Cluster Number of shared
read pairs		 k
16 33 0.029
163 11 0.0794
473 11 0.128
663 11 0.136
170 6 0.0369
1120 2 0.026
10800 2 0.0265
12900 2 0.0265
1 1 0.000295
13 1 0.000659
15 1 0.00096
41 1 0.000861
56 1 0.00082
58 1 0.000791
59 1 0.00101
63 1 0.000824
85 1 0.00283
1440 1 0.0127
15900 1 0.0133
20200 1 0.0133
28000 1 0.0133
31400 1 0.0133
36300 1 0.0133
37000 1 0.0133

CL175 ----> CL16

image

No. of shared pairs: :33

CL175 ----> CL163

image

No. of shared pairs: :11

CL175 ----> CL473

image

No. of shared pairs: :11

CL175 ----> CL663

image

No. of shared pairs: :11