Cluster no. 174

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Cluster is part of supercluster: 82

Cluster characteristics:

size 505
size_real 505
ecount 5501
supercluster 82
annotations_summary 0.59% Class_II/Subclass_2/Helitron:Helitron-HEL1
pair_completeness 0.655737704918033
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.631683168316832
satellite_probability 0.00252195213600682
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 170
S4 166
S6 169
comparative analysis - number of edges between species:
S5 S4 S6
S5 599 664 540
S4 664 745 620
S6 540 620 512
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.010 0.999 0.986
S4 0.999 0.996 1.010
S6 0.986 1.010 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Helitron Helitron-HEL1 Helitron Helitron-HEL1 3 0.0059

clusters with similarity:

Cluster Number of similarity hits
149 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
149 11 0.0541
1540 4 0.0721
4070 4 0.0727
10 3 0.00132
58 2 0.00161
127 2 0.00907
39300 2 0.0374
5 1 0.000441
36 1 9e-04
56 1 0.000835
63 1 0.000839
81 1 0.001
83 1 0.000873
94 1 0.00116
168 1 0.00532
502 1 0.0164
948 1 0.0183
1000 1 0.0175
5660 1 0.0183
6730 1 0.0187
10100 1 0.0185
15300 1 0.0187
17300 1 0.0187
34100 1 0.0187
38700 1 0.0187
46700 1 0.0187

CL174 ----> CL149

image

No. of shared pairs: :11