Cluster no. 173

Cluster no. 173

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Cluster is part of supercluster: 81

Cluster characteristics:

size	518
size_real	518
ecount	67194
supercluster	81
annotations_summary
pair_completeness	0.288557213930348
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.71042471042471
satellite_probability	0.000722619344944883
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	185
S4	157
S6	176

comparative analysis - number of edges between species:

	S5	S4	S6
S5	8640	7140	8300
S4	7140	5830	6900
S6	8300	6900	8060

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	1.000	1.000	0.996
S4	1.000	0.993	1.000
S6	0.996	1.000	1.000

protein domains:

No protein domains detected

protein domains:

Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster	Number of similarity hits

29	1700
23	807
129	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

23	144	0.058
29	115	0.0491
21	14	0.00587
1	1	0.000289
2	1	0.000309
11	1	0.00044
17	1	0.000612
64	1	0.000835
101	1	0.00173
129	1	0.00237
7440	1	0.00692
8190	1	0.00692

CL173 ----> CL23

No. of shared pairs: :144

CL173 ----> CL29

No. of shared pairs: :115

CL173 ----> CL21

No. of shared pairs: :14