Cluster no. 172

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Cluster is part of supercluster: 80

Cluster characteristics:

size 519
size_real 519
ecount 2951
supercluster 80
annotations_summary 1.16% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-CHDII
pair_completeness 0.611801242236025
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00192678227360308
satellite_probability 6.64175142550315e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 179
S4 173
S6 167
comparative analysis - number of edges between species:
S5 S4 S6
S5 341 332 324
S4 332 324 336
S6 324 336 299
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.010 0.99 0.999
S4 0.990 0.97 1.040
S6 0.999 1.04 0.957

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tcn1 Ty3-CHDII Tcn1 Ty3-CHDII 6 0.012

clusters with similarity:

Cluster Number of similarity hits
65 4

clusters connected through mates:

Cluster Number of shared
read pairs		 k
65 11 0.0167
1830 6 0.0909
1080 5 0.0741
1990 4 0.0611
299 3 0.0368
1620 3 0.0444
3110 3 0.0458
13200 3 0.0469
13300 3 0.0469
132 2 0.00928
3550 2 0.0305
8580 2 0.0312
9560 2 0.0312
13000 2 0.0312
3 1 0.000444
13 1 0.000664
41 1 0.00087
49 1 0.000838
63 1 0.000832
141 1 0.00707
218 1 0.00794
670 1 0.0143
735 1 0.015
2460 1 0.0154
4780 1 0.0156
5700 1 0.0155
7460 1 0.0159
8490 1 0.0156
9260 1 0.0159
10600 1 0.0159
11600 1 0.0156
12300 1 0.0159
14300 1 0.0157
16000 1 0.0157
18300 1 0.0157
20300 1 0.0157
37400 1 0.0157
40000 1 0.0157
40300 1 0.0157
41800 1 0.0157
44500 1 0.0157
46000 1 0.0157

CL172 ----> CL65

image

No. of shared pairs: :11