Cluster no. 171

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Cluster is part of supercluster: 79

Cluster characteristics:

size 521
size_real 521
ecount 1707
supercluster 79
annotations_summary 0.19% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.19% Class_II/Subclass_1/TIR/MuDR_Mutator:MuDR-TPase
pair_completeness 0.305764411027569
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00191938579654511
satellite_probability 1.14260235015906e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 189
S4 178
S6 154
comparative analysis - number of edges between species:
S5 S4 S6
S5 284 200 184
S4 200 226 154
S6 184 154 121
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.090 0.881 1.020
S4 0.881 1.150 0.987
S6 1.020 0.987 0.980

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
MuDR_Mutator MuDR-TPase MuDR_Mutator MuDR-TPase 1 0.0019
Ale Ty1-INT Ale Ty1-INT 1 0.0019

clusters with similarity:

Cluster Number of similarity hits
24 5

clusters connected through mates:

Cluster Number of shared
read pairs		 k
24 74 0.059
1820 5 0.0355
361 4 0.026
3570 4 0.0284
357 3 0.0192
625 3 0.0201
841 3 0.0208
1060 3 0.0211
1210 3 0.0208
1600 3 0.0209
2640 3 0.0211
248 2 0.0118
587 2 0.0138
1360 2 0.0139
1590 2 0.014
1910 2 0.0142
2060 2 0.0141
2400 2 0.0142
5850 2 0.0142
6020 2 0.0142
6080 2 0.0142
7530 2 0.0143
7580 2 0.0143
8820 2 0.0143
9330 2 0.0143
17200 2 0.0143
17800 2 0.0143
38400 2 0.0143
5 1 0.000425
13 1 0.000633
16 1 0.000832
32 1 0.000686
44 1 0.0015
58 1 0.000753
61 1 0.000753
66 1 0.00136
95 1 0.00311
421 1 0.00676
424 1 0.0066
477 1 0.00669
622 1 0.00699
713 1 0.00687
755 1 0.0069
816 1 0.00702
853 1 0.00699
1050 1 0.00697
1080 1 0.00707
1230 1 0.00697
1280 1 0.00697
1340 1 0.00702
1450 1 0.00699
1800 1 0.00704
2010 1 0.00707
2100 1 0.00702
2100 1 0.00707
2150 1 0.00712
2180 1 0.00712
2220 1 0.00707
2380 1 0.00709
2590 1 0.00704
2720 1 0.00709
3150 1 0.00707
3200 1 0.00707
3220 1 0.00707
3390 1 0.00712
3530 1 0.00707
3910 1 0.00709
4140 1 0.00709
4200 1 0.00709
4840 1 0.00717
5120 1 0.00712
5420 1 0.00712
6220 1 0.00712
7250 1 0.00712
8640 1 0.00714
8970 1 0.00719
9750 1 0.00714
11400 1 0.00714
16400 1 0.00717
17400 1 0.00717
21200 1 0.00717
21500 1 0.00717
22500 1 0.00717
28200 1 0.00717
28600 1 0.00717
29800 1 0.00717
30900 1 0.00717
31400 1 0.00717
32700 1 0.00717
34000 1 0.00717
35500 1 0.00717
40000 1 0.00717
40600 1 0.00717
42900 1 0.00717
45000 1 0.00717
45200 1 0.00717
46600 1 0.00717

CL171 ----> CL24

image

No. of shared pairs: :74