Cluster no. 170

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Cluster is part of supercluster: 78

Cluster characteristics:

size 537
size_real 537
ecount 4310
supercluster 78
annotations_summary
pair_completeness 0.504201680672269
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00186219739292365
satellite_probability 2.60623974767306e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 203
S4 154
S6 180
comparative analysis - number of edges between species:
S5 S4 S6
S5 587 415 592
S4 415 347 396
S6 592 396 568
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.995 0.968 1.030
S4 0.968 1.110 0.947
S6 1.030 0.947 1.010

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
16 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
175 6 0.0369
158 5 0.0309
1980 5 0.0541
16 3 0.0026
1140 3 0.0319
7 2 0.000895
7840 2 0.0222
21600 2 0.0223
33400 2 0.0223
41600 2 0.0223
15 1 0.000947
37 1 0.000944
46 1 0.000765
58 1 0.000782
63 1 0.000814
80 1 0.00367
106 1 0.00331
108 1 0.0012
118 1 0.0083
134 1 0.00284
137 1 0.00219
226 1 0.00844
236 1 0.00816
1120 1 0.0107
2020 1 0.0108
2900 1 0.011
3010 1 0.011
5070 1 0.011
6010 1 0.011
8540 1 0.0112
10200 1 0.0112
10500 1 0.0111
10800 1 0.0112
10900 1 0.0111
13400 1 0.0111
14200 1 0.0112
15200 1 0.0112
20900 1 0.0112
24700 1 0.0112
25200 1 0.0112
25800 1 0.0112
28700 1 0.0112
32200 1 0.0112
38300 1 0.0112
45000 1 0.0112
46400 1 0.0112