Cluster no. 168

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Cluster is part of supercluster: 76

Cluster characteristics:

size 609
size_real 609
ecount 18203
supercluster 76
annotations_summary 0.16% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.16% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.16% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.384090909090909
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00164203612479475
satellite_probability 7.55887620545779e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 191
S4 207
S6 211
comparative analysis - number of edges between species:
S5 S4 S6
S5 1670 1890 1940
S4 1890 2240 2240
S6 1940 2240 2160
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.000 0.982 1.01
S4 0.982 1.010 1.01
S6 1.010 1.010 0.98

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ivana Ty1-INT Ivana Ty1-INT 1 0.0016
Tekay Ty3-INT Tekay Ty3-INT 1 0.0016
TatV Ty3-RT TatV Ty3-RT 1 0.0016

clusters with similarity:

Cluster Number of similarity hits
166 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
4 5 0.00152
1 3 0.000868
9 3 0.00236
28 3 0.00168
35 3 0.00256
2 2 0.00062
12 2 0.000694
33 2 0.00209
46 2 0.00148
72 2 0.00178
73 2 0.00196
78 2 0.00287
79 2 0.00383
90 2 0.00321
134 2 0.00502
143 2 0.00618
185 2 0.0101
369 2 0.0132
6 1 0.000272
8 1 0.000464
10 1 0.000423
13 1 0.000634
17 1 0.000615
20 1 0.000562
22 1 0.00106
25 1 0.00133
27 1 0.000967
30 1 0.000571
31 1 0.000775
40 1 0.00101
44 1 0.00151
52 1 0.00104
54 1 0.000876
58 1 0.000754
64 1 0.000841
66 1 0.00137
69 1 0.00125
71 1 0.00116
80 1 0.00313
85 1 0.00241
86 1 0.00136
87 1 0.00138
93 1 0.00153
94 1 0.00106
96 1 0.00141
103 1 0.00116
110 1 0.00121
112 1 0.00133
113 1 0.00175
117 1 0.00159
121 1 0.0019
130 1 0.0022
132 1 0.00347
144 1 0.00476
153 1 0.00358
163 1 0.005
164 1 0.00349
166 1 0.00519
174 1 0.00532
218 1 0.00503
239 1 0.00641
250 1 0.00617
287 1 0.00639
308 1 0.00645
310 1 0.00635
443 1 0.00697
505 1 0.00709
650 1 0.00712
750 1 0.00699
905 1 0.00694
943 1 0.00707
1340 1 0.00717
2660 1 0.00725
3950 1 0.00725
5320 1 0.00733
8630 1 0.0073
12000 1 0.0073
30500 1 0.00733
30500 1 0.00733
31600 1 0.00733
35900 1 0.00733
42000 1 0.00733
45000 1 0.00733