Cluster no. 167

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Cluster is part of supercluster: 75

Cluster characteristics:

size 630
size_real 630
ecount 4606
supercluster 75
annotations_summary 94.76% organelle/plastid
pair_completeness 0.909090909090909
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00158730158730159
satellite_probability 2.49088588504597e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 200
S4 227
S6 203
comparative analysis - number of edges between species:
S5 S4 S6
S5 523 524 435
S4 524 572 562
S6 435 562 469
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.100 0.982 0.922
S4 0.982 0.958 1.060
S6 0.922 1.060 1.010

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 597 0.95

clusters with similarity:

Cluster Number of similarity hits
162 2
148 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
162 10 0.364
266 9 0.327
10 1 0.000446
49 1 0.000872

CL167 ----> CL162

image

No. of shared pairs: :10