Cluster no. 164

Cluster no. 164

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Cluster is part of supercluster: 4

Cluster characteristics:

size	714
size_real	714
ecount	4684
supercluster	4
annotations_summary	0.14% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-PROT
pair_completeness	0.405511811023622
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.425770308123249
satellite_probability	1.52035704244862e-06
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	227
S4	250
S6	237

comparative analysis - number of edges between species:

	S5	S4	S6
S5	496	492	542
S4	492	483	542
S6	542	542	555

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.993	0.994	1.010
S4	0.994	0.984	1.020
S6	1.010	1.020	0.969

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

TatIII Ty3-PROT TatIII Ty3-PROT 1 0.0014

clusters with similarity:

Cluster	Number of similarity hits

25	15
75	10
44	6
53	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

25	84	0.11
44	61	0.0901
75	10	0.0151
53	8	0.0113
10	2	0.000841
103	2	0.00228
19600	2	0.0132
15	1	0.000894
58	1	0.000746
101	1	0.00171
108	1	0.00112
110	1	0.00119
122	1	0.00184
168	1	0.00349
7040	1	0.00658
8090	1	0.00656
9800	1	0.0066
10200	1	0.00656
20900	1	0.00658
34700	1	0.00658

CL164 ----> CL25

No. of shared pairs: :84

CL164 ----> CL44

No. of shared pairs: :61

CL164 ----> CL75

No. of shared pairs: :10