Cluster no. 162

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Cluster is part of supercluster: 71

Cluster characteristics:

size 733
size_real 733
ecount 5369
supercluster 71
annotations_summary 83.90% organelle/plastid
pair_completeness 0.934036939313984
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00136425648021828
satellite_probability 1.56020511944627e-24
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 255
S4 245
S6 233
comparative analysis - number of edges between species:
S5 S4 S6
S5 700 652 568
S4 652 624 541
S6 568 541 523
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.020 1.00 0.973
S4 1.000 1.01 0.980
S6 0.973 0.98 1.050

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 615 0.84

clusters with similarity:

Cluster Number of similarity hits
167 2
124 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
167 10 0.364
124 7 0.171
12 1 0.000362
85 1 0.00343
154 1 0.0328
192 1 0.0328

CL162 ----> CL167

image

No. of shared pairs: :10